PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G067600.1
Common NameB456_002G067600, LOC105778838
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 212aa    MW: 23286.1 Da    PI: 10.0684
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G067600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-2057107256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr ++ +gr++AeIrdp++   ++r++lg+f+taeeAa+a++aa+++++g+
  Gorai.002G067600.1  57 RYRGVRKRP-WGRYAAEIRDPRK---KARVWLGTFDTAEEAARAYDAAAREFRGA 107
                         59*******.**********843...6*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-3657120IPR001471AP2/ERF domain
PROSITE profilePS5103224.31657114IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-2257115IPR016177DNA-binding domain
CDDcd000183.40E-1957116No hitNo description
PfamPF008472.4E-1457106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-3157114IPR001471AP2/ERF domain
PRINTSPR003671.4E-115869IPR001471AP2/ERF domain
PRINTSPR003671.4E-118096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKSQTVRFEL ILHYITTSLS FPSSLTHSFA AQGRKKNMAP KSQPVNPNPN TTMNEIRYRG  60
VRKRPWGRYA AEIRDPRKKA RVWLGTFDTA EEAARAYDAA AREFRGAKAK TNFTYTNIND  120
FTLSPSQSST VESSSPPPLD LTLASGSISL PMTANHPVFF VDVFASAGKR LSDAGGAQSD  180
SDSSSSVVDF ERGVQPRVFD FDLNQLPAEM I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1958113359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-1958113662ATERF1
3gcc_A2e-1958113662ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458056.11e-155PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotO803404e-42ERF78_ARATH; Ethylene-responsive transcription factor 4
TrEMBLA0A0D2R1S01e-155A0A0D2R1S0_G
STRINGscaffold_301765.14e-43(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3613422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-23ethylene responsive element binding factor 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]